diff --git a/src/utils/logger.ts b/src/utils/logger.ts
index dde431f..6ffaf4c 100644
--- a/src/utils/logger.ts
+++ b/src/utils/logger.ts
@@ -1,9 +1,12 @@
 import pino from 'pino';
 import { config } from '../config';
 
+// Detect if running in stdio mode (stdout must be reserved for MCP protocol)
+const isStdioMode = !process.env.MCP_TRANSPORT || process.env.MCP_TRANSPORT === 'stdio';
+
 export const logger = pino({
-  level: config.mcp.logLevel,
-  transport: {
+  level: isStdioMode ? 'silent' : config.mcp.logLevel,
+  transport: isStdioMode ? undefined : {
     target: 'pino-pretty',
     options: {
       colorize: true,
@@ -11,6 +14,10 @@ export const logger = pino({
       ignore: 'pid,hostname',
     },
   },
+  // In stdio mode, send any logs to stderr instead of stdout
+  ...(isStdioMode && {
+    browser: { write: () => {} },
+  }),
 });
 
 export function createLogger(name: string): pino.Logger {